csen
6. 10. 2025

With the adoption of the Employer’s Unified Monthly Report Act (JMHZ), an accompanying law amending the Income Tax Act (Act No. 586/1992 Coll., “ITA”) was also approved. Below is an overview of six major changes.

1. Adjustment of the R&D Tax Deduction (§ 34a ITA)

The amendment modifies the structure of the R&D deduction and brings new limits and higher tax support for companies:

  • The deduction can be applied within five subsequent periods.
  • The deduction equals 150% of eligible expenses, up to CZK 50 million.
  • Above this limit, only a 100% deduction applies.
  • The CZK 50 million cap is assessed for the entire “deduction group” (including related parties).

2. Removal of the Limit on Securities and Share Exemptions (§ 4 para. 1 letters u) and zk) ITA)

  • The annual exemption limit of CZK 40 million from the sale of securities and shares is abolished.
  • The standard holding period of 3 years for securities and 5 years for shares applies.
  • For crypto-assets, the CZK 40 million exemption limit remains in place.

3. New Regime for Employee Stock Options (§ 6 ITA)

A new concept of the qualified employee stock option has been introduced, defining clear conditions:

  • Must be agreed in writing, granted free of charge, and with a fixed exercise price.
  • Exercisable after 3 years (exceptions: majority share sale or IPO).
  • The employer must report the option to the tax authority.
  • Qualified employee: holds a max. 5% share, employed for at least 12 months, earning at least 1.2× the minimum wage.
  • Qualified employer: turnover up to CZK 2.5 billion, assets up to CZK 2 billion, not part of a larger group.
  • Taxation occurs upon sale of the shares acquired through the option:
    • The market value of the option is income under § 6.
    • The difference between market value and exercise price is income under § 10.
    • The difference between sale price and market value is also income under § 10.
  • This income is exempt from social and health insurance contributions.

4. End of Withholding Tax for Selected Income (§ 22 para. 1 ITA)

  • Withholding tax is abolished for:
    • Agreements to complete a job (DPP),
    • Agreements on work performance (DPČ),
    • Remuneration of members of statutory bodies – for non-resident taxpayers.
  • A standard advance tax will now apply instead.

5. Definition of Leisure-Time Benefits (§ 6 para. 9 ITA)

Employee benefits are now clearly distinguished from salary or remuneration. The following remain tax-exempt:

  • Sports and cultural vouchers,
  • Educational courses and similar benefits.

6. New Definition of a Low-Emission Vehicle (§ 6 para. 6 ITA)

The ITA introduces its own definition:

  • Low-emission vehicle = CO₂ emissions up to 50 g/km (not zero-emission).
  • For such vehicles, employees include only 0.5% of the acquisition price in taxable income (instead of 1%).
    Employers should review vehicle registration documents to ensure correct tax treatment of company cars.

If you have any questions, please contact the PKF APOGEO Tax Team.

Author: Alexa Horváthová - Junior Tax Consultant

Contact us

By submitting, you agree to the .

Cookies

Our website uses cookies. This allows us to offer you a more efficient user experience. You agree to the storage of cookies by clicking on the 'I agree' box.
You can refuse consent here.