6. 10. 2025
With the adoption of the Employer’s Unified Monthly Report Act (JMHZ), an accompanying law amending the Income Tax Act (Act No. 586/1992 Coll., “ITA”) was also approved. Below is an overview of six major changes.
1. Adjustment of the R&D Tax Deduction (§ 34a ITA)
The amendment modifies the structure of the R&D deduction and brings new limits and higher tax support for companies:
- The deduction can be applied within five subsequent periods.
- The deduction equals 150% of eligible expenses, up to CZK 50 million.
- Above this limit, only a 100% deduction applies.
- The CZK 50 million cap is assessed for the entire “deduction group” (including related parties).
2. Removal of the Limit on Securities and Share Exemptions (§ 4 para. 1 letters u) and zk) ITA)
- The annual exemption limit of CZK 40 million from the sale of securities and shares is abolished.
- The standard holding period of 3 years for securities and 5 years for shares applies.
- For crypto-assets, the CZK 40 million exemption limit remains in place.
3. New Regime for Employee Stock Options (§ 6 ITA)
A new concept of the qualified employee stock option has been introduced, defining clear conditions:
- Must be agreed in writing, granted free of charge, and with a fixed exercise price.
- Exercisable after 3 years (exceptions: majority share sale or IPO).
- The employer must report the option to the tax authority.
- Qualified employee: holds a max. 5% share, employed for at least 12 months, earning at least 1.2× the minimum wage.
- Qualified employer: turnover up to CZK 2.5 billion, assets up to CZK 2 billion, not part of a larger group.
- Taxation occurs upon sale of the shares acquired through the option:
- The market value of the option is income under § 6.
- The difference between market value and exercise price is income under § 10.
- The difference between sale price and market value is also income under § 10.
- This income is exempt from social and health insurance contributions.
4. End of Withholding Tax for Selected Income (§ 22 para. 1 ITA)
- Withholding tax is abolished for:
- Agreements to complete a job (DPP),
- Agreements on work performance (DPČ),
- Remuneration of members of statutory bodies – for non-resident taxpayers.
- A standard advance tax will now apply instead.
5. Definition of Leisure-Time Benefits (§ 6 para. 9 ITA)
Employee benefits are now clearly distinguished from salary or remuneration. The following remain tax-exempt:
- Sports and cultural vouchers,
- Educational courses and similar benefits.
6. New Definition of a Low-Emission Vehicle (§ 6 para. 6 ITA)
The ITA introduces its own definition:
- Low-emission vehicle = CO₂ emissions up to 50 g/km (not zero-emission).
- For such vehicles, employees include only 0.5% of the acquisition price in taxable income (instead of 1%).
Employers should review vehicle registration documents to ensure correct tax treatment of company cars.
If you have any questions, please contact the PKF APOGEO Tax Team.
Author: Alexa Horváthová - Junior Tax Consultant